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Get Services > High Performance Computing > Publication
HPC@NUS is SVU's e-newsletter for HPC users. It features technical articles of interest written by staff of SVU/Academic Computing, as well as highlights of selected user projects.
| Issue No 34, Nov 2012 NEW | Editorial - Big Data and HPC Speed up Your Code Execution using GPU Speed-up in NAMD Simulations for Cadherins using GPU Clusters iRODS - Large Data Set Archival and Management System PuTTY: A Free SSH Client Top 3 FAQs on HPC Services |
| Issue No 33, Aug 2012 | Editorial - Parallel Computing on Multi-core System GPU Advances Automatic Speech Recognition OpenFOAM Parallel Performance on HPC Running NAMD on Gold cluster GPU Computation in Mathematica 8 Exploring GPU in ABAQUS Analysis Running Parallel Jobs in a Single Compute Node |
| Issue No 32, Mar 2012 | Editorial - New HPC Cloud Service is Available Now OpenMP Application in Numerical Simulation of A Hovering Fruit Fly Solving High-Dimensional Stochastic Inventory Problems with OpenMP on HPC HPC Cloud in NUS for Research Computing More Powerful Resources Added to the HPC Resource Pool New GPU System at NUS HPC Using GPU in Matlab Parallel Computing Toolbox |
| Issue No 31, Nov 2011 | Editorial - Open Source Software Support Wind Flow Analysis for Urban Ventilation Next Generation Sequencing tools Open Source Applications for Modeling & Simulation of Nanomaterials Open Source CFD Solver - OpenFOAM The R Statistical Computing Software |
| Issue No 30, Aug 2011 | Editorial - Utility-based HPC Service Preview Molecular Dynamics Analysis on Buckling of Embedded Carbon Nanotubes Using Materials Studio Abinitio Protein Structure Prediction Service Guidelines for Utility-based HPC services On-Demand Pay-Per-Use Research Computing is on Cloud Software Accessible on the Servers Subscribed Through HPC Cloud On-Demand Storage Service via the Cloud |
| Issue No 29, Apr 2011 | Editorial - Reflecting on the Past and Plans for the Future NUS Grid Performance of MPI parallel jobs on HPC Cluster Designing Novel Surface Chemistry for Zinc Oxide Nanoparticles Using Vienna Ab-initio Simulation Package (VASP) A Decade of Statistics Achieving Efficient and Effective Use of Computer Centre’s HPC resource |
| Issue No 28, Jan 2011 | Editorial - More Cores With Better Power Efficiency |
| Issue No 27, Oct 2010 | Editorial - Catering For Ever Increasing Demand |
| Issue No 26, Jul 2010 | Editorial - Bring HPC Closer to Mainstream Computing NUS Eco Car Project Running Matlab Analysis with HPC Resources NUS HPCBIO Portal Updates High Productivity Computing on Windows HPC Introducing MEEP for Finite-difference Time-domain Simulations Optimising the Nehalem System Performance for Parallel Computing Through LSF Batch Scheduler |
| Issue No 25, Apr 2010 | Editorial - A Review/Preview of HPC Resources and Services Numerical Analysis of Riser Seabed Interaction DACH-Platinum-DNA Interactions: An Investigation into the Basis for Binding and Recognition by parallel molecular modeling High Performance Linux Cluster and Multicore Nehalem Processors File I/O Characteristics of the Parallel File System for HPC Run Fluent Simulation Faster on Nehalem A Gaussian 09 Linda Case Study |
| Issue No 24, Dec 2009 | Editorial - Showcasing HPC Challenge 2009 Winning Projects Parallel Computing and Dynamic Load Balancing for DG-WENO schemes Accelerating Evolutionary Molecular Phylogenetic Analyses on the NUS TCG Grid GARCH Models, Noise, and Particle Filters: in Pursuit of Parameters Statistical Analysis of Partially Calibrated Bio-pathway Models Computation of Lighting Energy Consumption using Parallelized Day Lighting Simulation A Hybrid Meshfree-Cartesian Scheme to Simulate Complex Moving Body Problems in Three-Dimensional Space Computational Fluid Dynamics Analysis on Drag Reduction for Grid-Fin Configurations |
| Issue No 23, Oct 2009 | Editorial - HPC Resources for Life Science
Research Molecular Simulation of a Functional Polyimide Containing Electron-Donor and -Acceptor Groups Using Gaussian 03 Software Package Accelerating Protein Phylogenetic Analysis by PHYLIP on NUS Grid NUS HPCBIO Portal A Highly Scalable, Parallel File System for Biological Sciences Accelerate Life Science Applications Using Grid Computing The Leading Molecular Electronic Structure Calculation Software Packages |
| Issue No 22, Jul 2009 | Editorial - Showcasing Parallel Application
Through HPC Challenge Perform Large Scale Two-step Simulation with NUS Grid Parallel Molecular Dynamics Simulations of Protein at Constant pH in Generalized Born Implicit Solvent Performance Analysers Improving Filesystem I/O Performance for Computational Clusters HPC Challenge 2009 |
| Issue No 21, Mar 2009 | Editorial - HPC Procurement Made Easy NUS Term Contract for x86 Based Servers Storage for High Performance Computing Systems Performance Benchmark Tools for HPC Systems Levels of Parallelism |
| Issue No 20, Nov 2008 | Editorial - Towards a High Productivity Computing Environment Enabling Large Business Research Models with SVU’s HPC Resources Direct Numerical Simulation of Turbulent Flow Using MPI Why Does HPC Matter to Me? Simulation of Silicon Nano-wires by Running Parallel CASTEP on Large Memory Multi-core Systems Accelerated Numerical Simulation of Moving Boundary Problems by OpenMP Parallelism |
| Issue No 19, Aug 2008 | Editorial - Effective Use of the New Muti-core Cluster How to Build Large Models and Run Faster Comparisons of Parallel Matlab Analysis on Multi-core HPC Systems OpenMP Route to Parallelism Performance of a Parallel Linear Equation Solver (PETSC) Run Gaussian 03 Jobs More Efficiently |
| Issue No 18, May 2008 | Editorial - HPC for the Masses 2 A New Integrated Portal to High Performance Computing Resources in NUS Access to NUSNET, NUS Email and HPC Resources with Same Account and Password NUS HPC BIO Portal Get More Work Done at a Faster Rate Tips and Tricks: Finding Additional Resources to Get More Work Done |
| Issue No 17, Jan 2008 | Editorial - HPC for the Masses MATLAB pmode - An Interactive Parallel Environment in the Distributed Computing Toolbox A Closer Look at the Matlab Bioinformatics Toolbox Faster Image Rendering with Windows Cluster HPC with Excel Graphics Modeling from Home? |
| Issue No 16, Aug 2007 | Editorial - Revisiting Parallel Computing MPI Parallel Performance Benchmark on Linux Cluster OpenMP 101 A New Paradigm in Parallel Computing using Matlab Distributed Computing Engine Molecular Dynamics Calculations Using Parallel Algorithm |
| Issue No 15, May 2007 | Editorial - Multicore Computing Multicore Parallel Computing with OpenMP Running Abaqus on Intel Quad-Core Servers in SVU Fluent Parallel Performance on Multi-Core System Run Materials Studio 4.1 on the New Linux Cluster Pathway to Productivity: The Matlab Bioinformatics Toolbox New Multithreaded Computation Feature in Matlab R2007a |
| Issue No 14, Jan 2007 | Editorial - Time to Reflect and to Look Forward High Performance Parallel File System - Another Feature in MobileVisLab Perform Large Scale High Accuracy Queue Simulation With TCG@NUS Dual-core and Quad-core Processors Systems in SVU Fluent Job Submission Made Easy MPI - 102 |
| Issue No 13, Sept 2006 | Editorial - Enhancing Visualisation & Collaboration Support MobileVisLab - A New Remote Collaborative Visualisation Service Enhancing Insight and Impact with Animated Graphics Medical Visualisation Using Analyze Visualise the Flow Inside a Centrifugal Pump NUS AccessGrid - a New Communication Framework |
| Issue No 12, Jun 2006 | TCG@NUS, A New Computing Platform for Life Science Related Applications The SYBYL Molecular Modeling Environment Molecular Modeling by InsightII Three Leading Molecular Dynamics Software Packages Molecular Dynamics Simulation on Cancer Targeted Protein-cyclin-depandent Kinases Complexes with Inhibitors HMMER Domain Searches for Analyzing the Implication of Alternative Splicing on the Domain Architecture Running ABAQUS Jobs via Message Passing Interface (MPI) |
| Issue No 11, Apr 2006 | 2005 Review/2006 Preview Highlights of HPC Competition 2006: PC Grid Computing Highlights of HPC Competition 2006: Grid Computing/NUSgrid Highlights of HPC Competition 2006: PC Grid Computing Highlights of HPC Competition Cluster-based Parallel Programming Highlights of HPC Competition 2006: Scientific Visualisation |
| Issue No 10, Dec 2005 | Scalable High-Performance Storage/File System for Research Computing Gaussian 03, a Powerful Computational Chemistry Package Some ABAQUS Results on the new EM64T cluster with GPFS FLUENT Speedup with Parallel File System NUSgrid Portal Parameter Sweep Modeling of the Hydroplaning Phenomenon |
| Issue No 9, Sep 2005 | Performance of a Parallel File System with Infiniband Interconnects NUSgrid Portal Another Milestone for the PC Grid (TCG@NUS) Development Submitting Hundreds of Computing Jobs With a Press of The Button New Software Resources for Molecular Modeling and Simulation at SVU Phylogenetic inference using Parallel version of MrBayes HPC Challenge 2005/2006 |
| Issue No 8, Jun 2005 | Photo-realistic Parallel Image Rendering on the PC Grid Comparative Modeling of Protein Three-dimensional Structures on a Grid Computing Environment Structured Product Pricing Simulation Using PC-Grid NUS on the National Grid GROMACS: Powerful Visualized Information Provider for Biopolymer Gelation The Intel Math Kernel Library |
| Issue No 7, Mar 2005 | Review 2004 Using Abaqus Environment File Highlights from GlobusWORLD 2005 Simple Ways to Edit Files on SVU Hosts New Version of the Remote Visualization Software |
| Issue No 6, Dec 2004 | PC Grid vs. Dedicated HPC Cluster Doing your part for security SG@home Ideas Make Necessary Backup for Your Fluent Jobs Open Source Tools for Computational Biology |
| Issue No 5, Sep 2004 | NUSGRID - A Computational Grid at NUS Parallel Fluent Processing New Features in Analyze MS Modeling 3.0 - A Material Science Modeling and Simulation Tool 64-bit Computing Support, Does It Matter? |
| Issue No 4, Jun 2004 | Benchmarking the New Itanium2 Systems Web-enabled StarOffice 7 Office Suite Distributed Mesh Generation for Computational Modeling of Cardiovascular Flows on a Grid Computing Environment Shorten the Computing Time as You Wish A brief look at the trends in HPC development |
| Issue No 3, Mar 2004 | Grid Innovation Zone@NUS (GIZ@NUS) Using MPI on Atlas Performance of MPI-based Applications Simulation of Passive Fluid Mixing in Microchannels Ready Made Advanced Visualisation Tools |
| Issue No 2, Nov 2003 | PC Compute Farm Applications First Principles Study of Elementary Chemical Reaction Dynamics Using The Remote And Collaborative Visualization System Three Fortran Compilers on Atlas Polyflow, The Powerful Simulation Tool For Polymer Process An Interview With Dr Putchong Uthayopas |
| Issue No 1, Jul 2003 | NUSGRID - A Prototype for Grid Computing HPC Linux Cluster High-Performance Remote Visualisation New capabilities for Computational Fluid Dynamics simulation Finite Element Study of Tunnel-Soil-Pile Interaction On Demand Computing PC Compute Farm Application |